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Interconvert various file formats supported by biopython. Supports querying records with JMESPath.
Project description
BioPython-Convert
Interconvert various file formats supported by BioPython.
Supports querying records with JMESPath.
Use
- Supported formats
- abi, abi-trim, ace, cif-atom, cif-seqres, clustal, embl, fasta, fasta-2line, fastq-sanger, fastq,fastq-solexa, fastq-illumina, genbank, gb, ig, imgt, nexus, pdb-seqres, pdb-atom, phd, phylip, pir, seqxml,sff, sff-trim, stockholm, swiss, tab, qual, uniprot-xml, gff3
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JMESPath
The root node for a query is a list of SeqRecord objects. The query can return a list with a subset of these ora mapping, keying to the constructor parameters of a SeqRecord object.
Append a new record:
Filter out any plasmids:
Keep only the first record:
See CONTRIBUTING.rst for information on contributing to this repo.
Release historyRelease notifications
1.0.3
1.0.2
1.0.0
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Filename, size | File type | Python version | Upload date | Hashes |
---|---|---|---|---|
Filename, size biopython.convert-1.0.3.tar.gz (3.7 MB) | File type Source | Python version None | Upload date | Hashes |
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